ppiface-big.png Detection of residues involved

in the formation of protein-protein interfaces is provided by this tool.

The resulting pairwise close contacts are further analysed for their bonding type:

New: This algorithm can also identify and characterise close contacts

between protein and DNA/RNA thanks to the extended bonding type inference.

DirectAccessURL

URL for direct computation of results of this tool:

http://i.moltalk.org/interface/3/PDB/1EEJ/65/66/3.4

parameters:

toolchain
"interface"
position
"3"
strxsrc
either "PDB" or "model"
strxid
4-letter pdb code or unique identifier of uploaded model
chaincode1
first chain, ASCII value of chain identifier (A=65, B=66, ' '=32, ...)
chaincode2
second chain, ASCII value of chain identifier (A=65, B=66, ' '=32, ...)
dthreshold
distance threshold